gc_percent_feature_types.svg (293.07 kB)
GC percent at sequence level of different feature types in the TGAC 1 assembly of Chalara fraxinea and associated read sets
The TGAC Chalara assembly at
https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/assemblies/gDNA/KW1_assembly_version1
and gDNA and RNAseq reads at
https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/reads
and the TGAC annotation at
https://github.com/ash-dieback-crowdsource/data/tree/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/annotations/Gene_predictions/TGAC_Chalara_fraxinea_ass_s1v1_ann_v1.1
were used as source for per sequence GC content examination. Sequence for features (CDS,exons, genes, introns, intergenic were extracted from the scaffold sequence based on the GFF annotation file).